Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs79196942 chr11:129973925 T/C 1.97E-6 493 30.93 32.22 22.8 KM Plot
PRAD rs79242155 chr1:1160224 C/T 2.58E-10 487 31.27 30.73 13.73 KM Plot
PRAD rs7924886 chr11:1650643 G/T 8.56E-5 488 25.83 32 31.37 KM Plot
PRAD rs79281810 chr1:1157684 C/T 3.49E-9 490 31.27 30.73 13.73 KM Plot
PRAD rs79301471 chr9:72942498 A/G 1.75E-5 492 30.8 31.4 22.45 KM Plot
PRAD rs79306700 chr6:43234901 T/C 6.99E-10 482 31.23 27.18 44.3 KM Plot
PRAD rs7930888 chr11:1638238 A/G 3.85E-6 473 16.53 29.23 31.27 KM Plot
PRAD rs79324330 chr9:72834327 C/T 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs79338985 chr4:187812900 T/A 2.16E-6 481 31.07 28.75 26.8 KM Plot
PRAD rs79339398 chr1:1157705 C/G 3.49E-9 490 31.27 30.73 13.73 KM Plot
PRAD rs79361728 chr1:1156735 T/C 2.91E-9 484 31.27 30.73 13.73 KM Plot
PRAD rs79367599 chr1:1158973 A/T 2.49E-10 487 31.27 30.73 13.73 KM Plot
PRAD rs7937618 chr11:1647110 T/C 2.07E-6 474 17.07 28.57 31.28 KM Plot
PRAD rs793919 chr4:185202848 G/A 0.000117 480 28.67 31.2 30.2 KM Plot
PRAD rs79405914 chr3:125723623 C/T 0.000163 476 29.97 33.95 20.03 KM Plot